View source for IC-ICT PBS-PRO cluster installation

== CE installation ==

* Install lcg-CE rpms
* up2date-nox -u lcg-CE

<pre>
[root@hep-ce aggarwa]# up2date-nox -u lcg-CE --nosig --dry-run

Fetching Obsoletes list for channel: rhel-i386-as-3...

Fetching Obsoletes list for channel: glite3...

Fetching obsoletes list for http://glitesoft.cern.ch/EGEE/gLite/APT/R3.0/rhel30/...

Fetching http://glitesoft.cern.ch/EGEE/gLite/APT/R3.0/rhel30//headers/header.info...
########################################
####################
Fetching Obsoletes list for channel: lcg2_CA...

Fetching obsoletes list for http://linuxsoft.cern.ch/LCG-CAs/current...

Fetching http://linuxsoft.cern.ch/LCG-CAs/current/headers/header.info...
########################################
####################
Fetching rpm headers...
########################################

Name                                    Version        Rel
----------------------------------------------------------
lcg-CE                                  3.0.11         1                 noarch


Testing package set / solving RPM inter-dependencies...

Downloading headers to solve dependencies...
#######################################
Downloading headers to solve dependencies...
#######################################
Downloading headers to solve dependencies...
#######################################
Downloading headers to solve dependencies...
#######################################
Downloading headers to solve dependencies...
#######################################
Downloading headers to solve dependencies...
There was a package dependency problem. The message was:

Unresolvable chain of dependencies:
edg-java-security-1.5.11-1_sl3           requires j2sdk >= 1.4.1
edg-java-security-client-1.5.11-1_sl3    requires j2sdk >= 1.4.1
edg-java-security-test-1.5.11-1_sl3      requires j2sdk >= 1.4.1
edg-wl-common-api-java-interface_gcc3_2_ requires j2sdk >= 1.4.1_01
edg-wl-common-api-java_gcc3_2_2-lcg2.1.7 requires j2sdk >= 1.4.1_01
edg-wl-ui-api-java-interface_gcc3_2_2-lc requires j2sdk >= 1.4.1_01
edg-wl-ui-api-java_gcc3_2_2-lcg2.1.74-3_ requires j2sdk >= 1.4.1_01
lcg-CE  3.0.11-1                         requires j2sdk
mysql  3.23.58-16.RHEL3.1                conflicts with MySQL


The following packages were added to your selection to satisfy dependencies:
Package                                Required by
----------------------------------------------------------------------------
boost-g3-1.29.1-06vh_sl3.i486           lcg-CE-3.0.11-1                         boost-g3
bouncycastle-jdk14-1.19-2.noarch        lcg-CE-3.0.11-1                         bouncycastle-jdk14
edg-info-ce-lcg2.6.39-1_sl3.i386        lcg-CE-3.0.11-1                         edg-info-ce
edg-info-main-lcg3.0.23-1_sl3.i386      lcg-CE-3.0.11-1                         edg-info-main
edg-wl-bypass_gcc3_2_2-lcg2.5.3-29_sl3.i486lcg-CE-3.0.11-1                         edg-wl-bypass_gcc3_2_2
edg-wl-chkpt-api_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-chkpt-api_gcc3_2_2
edg-wl-common-api-java-interface_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-common-api-java-interface_gcc3_2_2
edg-wl-common-api-java_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-common-api-java_gcc3_2_2
edg-wl-common-api_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-common-api_gcc3_2_2
edg-wl-config_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-config_gcc3_2_2
edg-wl-locallogger_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-locallogger_gcc3_2_2
edg-wl-logging-api-c_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-logging-api-c_gcc3_2_2
edg-wl-logging-api-cpp_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-logging-api-cpp_gcc3_2_2
edg-wl-logging-api-sh_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-logging-api-sh_gcc3_2_2
edg-wl-services-common_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-services-common_gcc3_2_2
edg-wl-ui-api-cpp_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-ui-api-cpp_gcc3_2_2
edg-wl-ui-api-java-interface_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-ui-api-java-interface_gcc3_2_2
edg-wl-ui-api-java_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-ui-api-java_gcc3_2_2
edg-wl-ui-cli_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-ui-cli_gcc3_2_2
edg-wl-ui-config_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-ui-config_gcc3_2_2
edg-wl-ui-gui_gcc3_2_2-lcg2.1.74-3_sl3.i486lcg-CE-3.0.11-1                         edg-wl-ui-gui_gcc3_2_2
gridice-sensor-1.6.0-23.i386            lcg-CE-3.0.11-1                         gridice-sensor
lcg-version-3.0.2-1.noarch              lcg-CE-3.0.11-1                         lcg-version
perl-SOAP-Lite-0.55-sl3.i386            lcg-CE-3.0.11-1                         perl-SOAP-Lite
perl-Tie-Syslog-1.07-1.i386             lcg-CE-3.0.11-1                         perl-Tie-Syslog
perl-URI-1.21-7.noarch                  edg-pool2info-1.0.1-1_sl3               perl-URI
perl-URI-1.21-7.noarch                  edg-netmon-info-provider-1.0.8-1_sl3    perl-URI
perl-XML-SAX-Base-1.04-1.i386           lcg-CE-3.0.11-1                         perl-XML-SAX-Base
perl-ldap-0.31-sl3.i386                 lcg-CE-3.0.11-1                         perl-ldap

[root@hep-ce aggarwa]# up2date-nox -u j2sdk --nosig --dry-run

Fetching Obsoletes list for channel: rhel-i386-as-3...

Fetching Obsoletes list for channel: glite3...

Fetching Obsoletes list for channel: lcg2_CA...

Fetching rpm headers...
########################################

Name                                    Version        Rel
----------------------------------------------------------

All packages are currently up to date

</pre>

* install j2sdk
* install perl-Net-LDAP

* Re-try lcg-CE installation


<pre>
Installing...
   1:glite-rgma-base        ########################################### [100%]
   2:log4j                  ########################################### [100%]
   3:lcg-info-generic       ########################################### [100%]
   4:glite-apel-core        ########################################### [100%]
   5:perl-URI               ########################################### [100%]
   6:glite-essentials-java  ########################################### [100%]
   7:gpt                    ########################################### [100%]

......



070315 13:53:44 [Warning] Asked for 196608 thread stack, but got 126976
/usr/bin/mysql_install_db: line 1: 23723 Segmentation fault      /usr/sbin/mysqld --bootstrap --skip-grant-tables --basedir=/ --datadir=/var/lib/mysql --skip-innodb --skip-bdb --skip-ndbcluster --user=mysql --max_allowed_packet=8M --net_buffer_length=16K
cat: write error: Broken pipe
Installation of system tables failed!

Examine the logs in /var/lib/mysql for more information.
You can also try to start the mysqld daemon with:
/usr/sbin/mysqld --skip-grant &
You can use the command line tool
/usr/bin/mysql to connect to the mysql
database and look at the grant tables:

shell> /usr/bin/mysql -u root mysql
mysql> show tables

Try 'mysqld --help' if you have problems with paths. Using --log
gives you a log in /var/lib/mysql that may be helpful.

The latest information about MySQL is available on the web at
http://www.mysql.com
Please consult the MySQL manual section: 'Problems running mysql_install_db',
and the manual section that describes problems on your OS.
Another information source is the MySQL email archive.
Please check all of the above before mailing us!
And if you do mail us, you MUST use the /usr/bin/mysqlbug script!
Starting MySQL...................................[FAILED]
  60:MySQL-client           ########################################### [100%]
  61:edg-wl-ui-api-cpp_gcc3_########################################### [100%]
  62:edg-wl-logging-api-sh_g########################################### [100%]
  63:edg-wl-locallogger_gcc3########################################### [100%]
  64:edg-wl-ui-gui_gcc3_2_2 ########################################### [100%]
  65:edg-lcas_gcc3_2_2-voms_########################################### [100%]
  66:glite-security-voms-adm########################################### [100%]
  67:edg-java-data-util     ########################################### [100%]
  68:lcg-auditlog           ########################################### [100%]
  69:xerces-j1              ########################################### [100%]
  70:glite-rgma-command-line########################################### [100%]
  71:vdt_globus_info_server ########################################### [100%]
  72:lcg-extra-jobmanagers  ########################################### [100%]
  73:glite-rgma-log4cpp     ########################################### [100%]
  74:edg-wl-ui-api-java-inte########################################### [100%]
  75:edg-wl-common-api-java-########################################### [100%]
  76:edg-info-service       ########################################### [100%]
  77:glite-apel-publisher   ########################################### [100%]
  78:glite-rgma-gin         ########################################### [100%]
  79:glite-rgma-log4j       ########################################### [100%]
error: unpacking of archive failed on file /opt/glite/share/doc/rgma-log4j/html/overview-tree.html;45f94f10: cpio: read
There was a fatal RPM install error. The message was:
There was a rpm unpack error installing the package: glite-rgma-log4j-5.0.2-1

</pre>

* Install package glite-rgma-log4j-5.0.2-1

<pre>

[root@hep-ce aggarwa]# up2date-nox -u glite-rgma-log4j --nosig

Fetching Obsoletes list for channel: rhel-i386-as-3...

Fetching Obsoletes list for channel: glite3...

Fetching Obsoletes list for channel: lcg2_CA...

Fetching rpm headers...
########################################

Name                                    Version        Rel
----------------------------------------------------------
glite-rgma-log4j                        5.0.2          1                 noarch


Testing package set / solving RPM inter-dependencies...
########################################
error: rpmts_HdrFromFdno: MD5 digest: BAD Expected(6b81ac1c12fa8ca297a0c5c3a3bbf4bc) != (ffbca2a0aa5db9034a59bfb485f6bb52)
glite-rgma-log4j-5.0.2-1.no ########################## Done.
Preparing              ########################################### [100%]

Installing...
   1:glite-rgma-log4j       ########################################### [100%]
[root@hep-ce aggarwa]#

</pre>

* up2date-nox -u glite-yaim --nosig